U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Zalophus californianus (California sea lion) ]

    Gene ID: 113931012, updated on 15-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    AP1S2
    Gene description
    adaptor related protein complex 1 subunit sigma 2
    See related
    EnsemblRapid:ENSZCAG00025015964
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zalophus californianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AP1S2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current mZalCal1.pri.v2 (GCF_009762305.2) X NC_045612.1 (117076780..117105516)
    100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020874514.1 (11994608..12023340, complement)

    Chromosome X - NC_045612.1Genomic Context describing neighboring genes Neighboring gene MAGE family member B17 Neighboring gene 40S ribosomal protein S24-like Neighboring gene gastrin releasing peptide receptor Neighboring gene carbonic anhydrase 5B, mitochondrial Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene serine/arginine-rich splicing factor 11-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AP-1 complex subunit sigma-2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mZalCal1.pri.v2 Primary Assembly

    Genomic

    1. NC_045612.1 Reference mZalCal1.pri.v2 Primary Assembly

      Range
      117076780..117105516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027608721.2 → XP_027464522.1  AP-1 complex subunit sigma-2 isoform X1

      UniProtKB/TrEMBL
      A0A6J2EC88

    2. XM_027608723.2 → XP_027464524.1  AP-1 complex subunit sigma-2 isoform X3

      UniProtKB/TrEMBL
      A0A6J2E6H7
      Related
      ENSZCAP00025025142.1, ENSZCAT00025028533.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 144
      AP1_sigma; AP-1 complex subunit sigma

    3. XM_027608725.2 → XP_027464526.1  AP-1 complex subunit sigma-2 isoform X5

      UniProtKB/TrEMBL
      A0A6J2E8K1
      Related
      ENSZCAP00025025130.1, ENSZCAT00025028519.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 142
      AP1_sigma; AP-1 complex subunit sigma

    4. XM_027608722.2 → XP_027464523.1  AP-1 complex subunit sigma-2 isoform X2

      UniProtKB/TrEMBL
      A0A6J2EFR5
      Related
      ENSZCAP00025025101.1, ENSZCAT00025028487.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 144
      AP1_sigma; AP-1 complex subunit sigma

    5. XM_027608724.2 → XP_027464525.1  AP-1 complex subunit sigma-2 isoform X4

      UniProtKB/TrEMBL
      A0A6J2E711
      Related
      ENSZCAP00025025090.1, ENSZCAT00025028476.1
      Conserved Domains (1) summary
      cd14831
      Location:2 → 144
      AP1_sigma; AP-1 complex subunit sigma

    RNA

    1. XR_003522650.2 RNA Sequence

      Related
      ENSZCAT00025028363.1

    2. XR_003522649.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.