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    VSP1 vegetative storage protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832547, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VSP1
    Official Full Name
    vegetative storage protein 1
    Primary source
    TAIR:AT5G24780
    Locus tag
    AT5G24780
    See related
    Araport:AT5G24780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATVSP1; T4C12.50; vegetative storage protein 1; VEGETATIVE STORAGE PROTEIN 1
    Summary
    encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.
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    Genomic context

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    See VSP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (8507590..8509201, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene vegetative storage protein 2 Neighboring gene pseudo Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF599) Neighboring gene basic leucine zipper 9 Neighboring gene ABC1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystallization and preliminary crystallographic analysis of recombinant VSP1 from Arabidopsis thaliana. Shi ZB, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2010 Feb 1. PMID 20124723, Free PMC Article
    2. The crystal structure of Arabidopsis VSP1 reveals the plant class C-like phosphatase structure of the DDDD superfamily of phosphohydrolases. Chen Y, et al. PLoS One, 2012. PMID 23166664, Free PMC Article
    3. Local and differential control of vegetative storage protein expression in response to herbivore damage in Arabidopsis thaliana. Berger S, et al. Physiol Plant, 2002 Jan. PMID 11982938
    4. The Arabidopsis mutant cev1 has constitutively active jasmonate and ethylene signal pathways and enhanced resistance to pathogens. Ellis C, et al. Plant Cell, 2001 May. PMID 11340179, Free PMC Article
    5. Floral transcription factor AGAMOUS interacts in vitro with a leucine-rich repeat and an acid phosphatase protein complex. Gamboa A, et al. Biochem Biophys Res Commun, 2001 Nov 9. PMID 11689012

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125801.1
    NM_122387.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acid phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription factor binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    vegetative storage protein 1
    NP_001119273.1
    • vegetative storage protein 1 (VSP1); CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: vegetative storage protein 2 (TAIR:AT5G24770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_568455.1
    • vegetative storage protein 1 (VSP1); FUNCTIONS IN: transcription factor binding, acid phosphatase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, defense response; LOCATED IN: vacuole; EXPRESSED IN: fruit, gynoecium, valve; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: vegetative storage protein 2 (TAIR:AT5G24770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8507590..8509201 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122387.4 → NP_568455.1  vegetative storage protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568455.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23827, O49195, O82121, Q39259, Q42000, Q93VJ6
      UniProtKB/TrEMBL
      A0A178UP19, A0A654G419
      Conserved Domains (1) summary
      TIGR01675
      Location:42 → 269
      plant-AP; plant acid phosphatase

    2. NM_001125801.1 → NP_001119273.1  vegetative storage protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119273.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H5J6
      Conserved Domains (1) summary
      cl21460
      Location:42 → 214
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49195.2

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