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    translocon-associated protein beta (TRAPB) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831251, updated on 18-Sep-2024

    Summary

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    Official Full Name
    translocon-associated protein beta (TRAPB) family protein
    Primary source
    TAIR:AT5G14030
    Locus tag
    AT5G14030
    See related
    Araport:AT5G14030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUA22.2; MUA22_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (4526766..4529614)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene tRNA-Lys Neighboring gene phosphate transporter 3;1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001125749.1
    NM_001125751.1
    NM_001343312.1
    NM_001343313.1
    NM_121406.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein beta (TRAPB) family protein
    NP_001119221.1
    • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001119223.1
    • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318558.1
    • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_568293.1
    • translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4526766..4529614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121406.5 → NP_568293.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568293.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
      Conserved Domains (1) summary
      pfam05753
      Location:13 → 192
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    2. NM_001343313.1 → NP_001331889.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BF69

    3. NM_001125751.1 → NP_001119223.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119223.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
      Conserved Domains (1) summary
      pfam05753
      Location:13 → 192
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    4. NM_001125749.1 → NP_001119221.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119221.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
      Conserved Domains (1) summary
      pfam05753
      Location:13 → 192
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    5. NM_001343312.1 → NP_001318558.1  translocon-associated protein beta (TRAPB) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UED6, A0A654G0U5, Q94BY3, Q9FMU7
      Conserved Domains (1) summary
      pfam05753
      Location:13 → 192
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein
    Heading Accession and Version

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