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    Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817893, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription elongation factor (TFIIS) family protein
    Primary source
    TAIR:AT2G33300
    Locus tag
    AT2G33300
    See related
    Araport:AT2G33300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4P9.7; F4P9_7
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14113025..14114200)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SU(VAR)3-9 homolog 2 Neighboring gene auxin-induced protein 13 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene plasmodesmata-located protein 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128890.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription elongation factor (TFIIS) family protein
    NP_180888.2
    • Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT2G33090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14113025..14114200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128890.2 → NP_180888.2  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180888.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W0H2, A0A5S9X3S8, Q1PEX4
      Conserved Domains (1) summary
      smart00509
      Location:185 → 264
      TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
    Nucleotide Protein
    Heading Accession and Version

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