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    Y41D4A.4 Transmembrane 9 superfamily member [ Caenorhabditis elegans ]

    Gene ID: 176983, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y41D4A.4
    Official Full Name
    Transmembrane 9 superfamily member
    Primary source
    WormBase:WBGene00021506
    Locus tag
    CELE_Y41D4A.4
    See related
    AllianceGenome:WB:WBGene00021506
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in protein localization to membrane. Predicted to be active in membrane. Is expressed in several structures, including enteric muscle; head; hypodermis; pharynx; and reproductive system. Orthologous to human TM9SF3 (transmembrane 9 superfamily member 3). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y41D4A.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (1746001..1751459)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene Protein-tyrosine-phosphatase Neighboring gene Amidase domain-containing protein;Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial Neighboring gene BUB1 N-terminal domain-containing protein Neighboring gene F-box associated domain-containing protein Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in protein localization to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane 9 superfamily member
    NP_001368299.1
    • Confirmed by transcript evidence
    NP_001368300.1
    • Confirmed by transcript evidence
    NP_001368301.1
    • Confirmed by transcript evidence
    NP_001368302.1
    • Confirmed by transcript evidence
    NP_500130.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      1746001..1751459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067729.6 → NP_500130.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500130.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Y24
      Conserved Domains (1) summary
      pfam02990
      Location:46 → 537
      EMP70; Endomembrane protein 70

    2. NM_001380061.2 → NP_001368299.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PBU4
      Conserved Domains (1) summary
      pfam02990
      Location:50 → 540
      EMP70; Endomembrane protein 70

    3. NM_001380062.2 → NP_001368302.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PRX8
      Conserved Domains (1) summary
      pfam02990
      Location:47 → 533
      EMP70; Endomembrane protein 70

    4. NM_001380063.1 → NP_001368300.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PC73
      Conserved Domains (1) summary
      pfam02990
      Location:2 → 469
      EMP70; Endomembrane protein 70

    5. NM_001380064.1 → NP_001368301.1  Transmembrane 9 superfamily member [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PML6
    Nucleotide Protein
    Heading Accession and Version

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