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    C27H5.2 TAR DNA-binding protein 43 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 174176, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C27H5.2
    Official Full Name
    TAR DNA-binding protein 43 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00016172
    Locus tag
    CELE_C27H5.2
    See related
    AllianceGenome:WB:WBGene00016172
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable DNA binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C27H5.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    14
    Sequence:
    Chromosome: II; NC_003280.10 (7155581..7160961)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Zinc finger PHD-type domain-containing protein Neighboring gene RNA-binding protein FUS Neighboring gene Ferrochelatase Neighboring gene Transmembrane protein 180

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. UNC-83 coordinates kinesin-1 and dynein activities at the nuclear envelope during nuclear migration. Fridolfsson HN, et al. Dev Biol, 2010 Feb 15. PMID 20005871, Free PMC Article
    2. Protein interaction mapping in C. elegans using proteins involved in vulval development. Walhout AJ, et al. Science, 2000 Jan 7. PMID 10615043
    3. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
    4. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TAR DNA-binding protein 43 N-terminal domain-containing protein
    NP_495484.1
    • Confirmed by transcript evidence
    NP_495485.1
    • Confirmed by transcript evidence
    NP_872042.1
    • Confirmed by transcript evidence
    NP_872043.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      7155581..7160961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063083.5 → NP_495484.1  TAR DNA-binding protein 43 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495484.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZ24
      Conserved Domains (2) summary
      COG1196
      Location:166 → 500
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam18694
      Location:7 → 80
      TDP43_N; Transactive response DNA-binding protein N-terminal domain

    2. NM_182242.4 → NP_872042.1  TAR DNA-binding protein 43 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_872042.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZ26
      Conserved Domains (2) summary
      COG1196
      Location:166 → 466
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam18694
      Location:7 → 80
      TDP43_N; Transactive response DNA-binding protein N-terminal domain

    3. NM_182243.5 → NP_872043.1  TAR DNA-binding protein 43 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_872043.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IG43
      Conserved Domains (2) summary
      TIGR02168
      Location:153 → 409
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam18694
      Location:7 → 80
      TDP43_N; Transactive response DNA-binding protein N-terminal domain

    4. NM_063084.6 → NP_495485.1  TAR DNA-binding protein 43 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495485.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZ25
      Conserved Domains (2) summary
      TIGR02168
      Location:153 → 409
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam18694
      Location:7 → 80
      TDP43_N; Transactive response DNA-binding protein N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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