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    MEF7 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830856, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEF7
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT5G09950
    Locus tag
    AT5G09950
    See related
    Araport:AT5G09950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    mitochondrial editing factor 7; MYH9.16; MYH9_16
    Summary
    Encodes a DYW-class PPR protein required for RNA editing at four sites in mitochondria of A. thaliana.
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    Genomic context

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    See MEF7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (3102195..3105950, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, Rpb4, core protein Neighboring gene ABC transporter family protein Neighboring gene hypothetical protein (DUF1635) Neighboring gene sorbin/SH3 domain protein Neighboring gene cytochrome P450, family 78, subfamily A, polypeptide 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana. Zehrmann A, et al. RNA Biol, 2012 Feb. PMID 22258224
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001318522.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 58090 Blast hits to 13690 proteins in 227 species: Archae - 0; Bacteria - 7; Metazoa - 25; Fungi - 46; Plants - 57493; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3102195..3105950 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343079.1 → NP_001318522.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIB2
      UniProtKB/TrEMBL
      A0A178UME2

    2. NM_001343080.1 → NP_001330962.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCH0, A0A7G2FBJ0

    3. NM_121032.1 → NP_196557.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196557.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIB2
      UniProtKB/TrEMBL
      A0A178UME2
      Conserved Domains (4) summary
      sd00004
      Location:687 → 714
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:686 → 715
      PPR; PPR repeat
      pfam13041
      Location:684 → 733
      PPR_2; PPR repeat family
      pfam14432
      Location:861 → 984
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIB2.1

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