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    F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842093, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein
    Primary source
    TAIR:AT1G56400
    Locus tag
    AT1G56400
    See related
    Araport:AT1G56400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13N6.18; F13N6_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (21111727..21113621, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene miscRNA Neighboring gene heat shock protein 70 (Hsp 70) family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein
    NP_001185249.1
    • F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G54820.1).
    NP_176035.1
    • F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G54820.1); Has 1044 Blast hits to 1032 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21111727..21113621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198320.2 → NP_001185249.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185249.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EJ05, F4I537
      Conserved Domains (2) summary
      sd00032
      Location:119 → 140
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:13 → 46
      F-box; F-box domain

    2. NM_104518.1 → NP_176035.1  F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176035.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C7X8
      UniProtKB/TrEMBL
      A0A5S9WMF0, A0A654EJ05
      Conserved Domains (2) summary
      sd00032
      Location:160 → 181
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:13 → 50
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7X8.1

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