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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819771, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT3G06000
    Locus tag
    AT3G06000
    See related
    Araport:AT3G06000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2O10.4; F2O10_4
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (1801446..1802081)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene SNF2/Brahma-type chromatin-remodeling protein CHR12 Neighboring gene uncharacterized protein Neighboring gene FANTASTIC four-like protein (DUF3049)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_187251.1
    • RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 2 (TAIR:AT5G19320.1); Has 2389 Blast hits to 1517 proteins in 172 species: Archae - 0; Bacteria - 173; Metazoa - 1218; Fungi - 45; Plants - 294; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1801446..1802081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111474.1 → NP_187251.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187251.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VK97, A0A384KI76, A0A5S9XAM7, Q9SFG4
      Conserved Domains (2) summary
      sd00033
      Location:39 → 67
      LRR_RI; leucine-rich repeat [structural motif]
      cl39015
      Location:33 → 170
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein
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