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    syne2b spectrin repeat containing, nuclear envelope 2b [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117467986, updated on 19-Mar-2024

    Summary

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    Gene symbol
    syne2b
    Gene description
    spectrin repeat containing, nuclear envelope 2b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
    Orthologs
    zebrafish all
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    Genomic context

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    See syne2b in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    131
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 22 NC_047524.1 (7868322..8022757, complement)

    Chromosome 22 - NC_047524.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein 6-B-like Neighboring gene BRF1 general transcription factor IIIB subunit a Neighboring gene protein jagged-2-like Neighboring gene estrogen receptor 2b Neighboring gene glycoprotein hormone subunit beta 5 Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 5b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047524.1 Chromosome 22 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: nesprin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047524.1 Reference fPseGeo1.1

      Range
      7868322..8022757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034111935.1 → XP_033967826.1  LOW QUALITY PROTEIN: nesprin-2

      Conserved Domains (13) summary
      PHA03269
      Location:2007 → 2138
      PHA03269; envelope glycoprotein C; Provisional
      PHA02682
      Location:2010 → 2268
      PHA02682; ORF080 virion core protein; Provisional
      PRK02224
      Location:2384 → 2872
      PRK02224; DNA double-strand break repair Rad50 ATPase
      PHA03247
      Location:1463 → 2068
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:2676 → 3468
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK03918
      Location:8758 → 9026
      PRK03918; DNA double-strand break repair ATPase Rad50
      PRK10263
      Location:1066 → 1565
      PRK10263; DNA translocase FtsK; Provisional
      cd00176
      Location:9116 → 9326
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:3226 → 4040
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam03154
      Location:1374 → 1732
      Atrophin-1; Atrophin-1 family
      pfam10541
      Location:9813 → 9870
      KASH; Nuclear envelope localization domain
      cl00030
      Location:32 → 142
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:8047 → 8272
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    Nucleotide Protein
    Heading Accession and Version

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