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    EHI_017700 60S ribosomal protein L13, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3405574, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_017700
    Gene description
    60S ribosomal protein L13, putative
    Locus tag
    EHI_017700
    See related
    AmoebaDB:EHI_017700; VEuPathDB:EHI_017700
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    173.t00008
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    Genomic context

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    See EHI_017700 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001914955.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene zinc finger protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914955.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L13, putative
    XP_651269.1
    • encoded by transcript EHI_017700A
      Reference: Sharma,R., Azam,A., Bhattacharya,S. and Bhattacharya,A. Identification of novel genes of non-pathogenic Entamoeba dispar by expressed sequence tag analysis Mol. Biochem. Parasitol. 99 (2), 279-285 (1999) This functional annotation is a direct result of community participation in an Entamoeba Annotation Jamboree.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914955.1 Reference assembly

      Range
      37686..38348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_646177.2 → XP_651269.1  60S ribosomal protein L13, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_651269.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A060N293, A0A175JTL1, A0A5K1VPR3, C4M3F3, M2RSM6
      Conserved Domains (1) summary
      PTZ00068
      Location:3 → 205
      PTZ00068; 60S ribosomal protein L13a; Provisional
    Nucleotide Protein
    Heading Accession and Version

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