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    EHI_199110 lysozyme, putative [ Entamoeba histolytica HM-1:IMSS ]

    Gene ID: 3407600, updated on 17-May-2024

    Summary

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    Gene symbol
    EHI_199110
    Gene description
    lysozyme, putative
    Locus tag
    EHI_199110
    See related
    AmoebaDB:EHI_199110; VEuPathDB:EHI_199110
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
    Old locus tag
    87.t00026
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    Genomic context

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    See EHI_199110 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001914880.1Genomic Context describing neighboring genes Neighboring gene RhoGAP domain containing protein Neighboring gene SAC3/GANP family protein Neighboring gene Ser/Thr protein phosphatase, putative Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001914880.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysozyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysozyme, putative
    XP_653294.1
    • encoded by transcript EHI_199110A

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001914880.1 Reference assembly

      Range
      111114..111772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_648202.2 → XP_653294.1  lysozyme, putative [Entamoeba histolytica HM-1:IMSS]

      See identical proteins and their annotated locations for XP_653294.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      A0A175JHN4, C4LWV6, Q27650
      UniProtKB/TrEMBL
      A0A5K1TVI4, M2RYG8, M3UTQ5, M7X876, N9V2P6
      Conserved Domains (1) summary
      cd06416
      Location:14 → 210
      GH25_Lys1-like; Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 ...
    Nucleotide Protein
    Heading Accession and Version

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