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    cal-4 EF-hand domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177945, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cal-4
    Official Full Name
    EF-hand domain-containing protein
    Primary source
    WormBase:WBGene00000288
    Locus tag
    CELE_T07G12.1
    See related
    AllianceGenome:WB:WBGene00000288
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be active in centrosome and cytoplasm. Is expressed in anal depressor muscle; body wall musculature; and reproductive system. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cal-4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    7
    Sequence:
    Chromosome: IV; NC_003282.8 (10521406..10530598)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Solute carrier family 23 member 2 Neighboring gene DUF229 domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of the multiple calmodulin-like cal genes in C. elegans and in nematodes. Karabinos A. Dev Genes Evol, 2016 Sep. PMID 27558386
    2. Cytokinesis is not controlled by calmodulin or myosin light chain kinase in the Caenorhabditis elegans early embryo. Batchelder EL, et al. FEBS Lett, 2007 Sep 4. PMID 17716666, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calcium ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    EF-hand domain-containing protein
    NP_001255491.1
    • Confirmed by transcript evidence
    NP_001379504.1
    • Confirmed by transcript evidence
    NP_001379505.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10521406..10530598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392393.1 → NP_001379505.1  EF-hand domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EF93
      Conserved Domains (1) summary
      PTZ00184
      Location:40 → 183
      PTZ00184; calmodulin; Provisional

    2. NM_001392392.1 → NP_001379504.1  EF-hand domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDZ8
      Conserved Domains (1) summary
      PTZ00184
      Location:68 → 211
      PTZ00184; calmodulin; Provisional

    3. NM_001268562.3 → NP_001255491.1  EF-hand domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255491.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O18058
      Conserved Domains (2) summary
      PTZ00184
      Location:14 → 157
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:97 → 158
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version

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