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    LOC116783262 regucalcin [ Chiroxiphia lanceolata (lance-tailed manakin) ]

    Gene ID: 116783262, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC116783262
    Gene description
    regucalcin
    See related
    EnsemblRapid:ENSCLNG00000002246
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chiroxiphia lanceolata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
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    Genomic context

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    See LOC116783262 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current bChiLan1.pri (GCF_009829145.1) 2 NC_045638.1 (34255213..34339836)

    Chromosome 2 - NC_045638.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene solute carrier family 9 member A7 Neighboring gene RP2 activator of ARL3 GTPase Neighboring gene regucalcin-like Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045638.1 Chromosome 2 Reference bChiLan1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables enzyme regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables gluconolactonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-ascorbic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-3; regucalcin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bChiLan1.pri

    Genomic

    1. NC_045638.1 Reference bChiLan1.pri

      Range
      34255213..34339836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032680651.1 → XP_032536542.1  protein Jade-3 isoform X3

      Conserved Domains (3) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like
      cl22851
      Location:257 → 367
      PHD_SF; PHD finger superfamily

    2. XM_032680653.1 → XP_032536544.1  protein Jade-3 isoform X4

      Conserved Domains (3) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like
      cl22851
      Location:257 → 367
      PHD_SF; PHD finger superfamily

    3. XM_032680652.1 → XP_032536543.1  protein Jade-3 isoform X4

      Related
      ENSCLNP00000003119.1, ENSCLNT00000003335.1
      Conserved Domains (3) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like
      cl22851
      Location:257 → 367
      PHD_SF; PHD finger superfamily

    4. XM_032680650.1 → XP_032536541.1  protein Jade-3 isoform X2

      Conserved Domains (4) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15706
      Location:257 → 367
      ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins
      pfam08450
      Location:814 → 912
      SGL; SMP-30/Gluconolaconase/LRE-like region
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like

    5. XM_032680655.1 → XP_032536546.1  protein Jade-3 isoform X5

      Conserved Domains (3) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like
      cl22851
      Location:257 → 367
      PHD_SF; PHD finger superfamily

    6. XM_032680649.1 → XP_032536540.1  protein Jade-3 isoform X1

      Related
      ENSCLNP00000003104.1, ENSCLNT00000003320.1
      Conserved Domains (4) summary
      COG5141
      Location:140 → 512
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15706
      Location:257 → 367
      ePHD_JADE3; Extended PHD finger found in protein Jade-3 and similar proteins
      pfam08450
      Location:814 → 1061
      SGL; SMP-30/Gluconolaconase/LRE-like region
      pfam10513
      Location:90 → 179
      EPL1; Enhancer of polycomb-like

    7. XM_032680656.1 → XP_032536547.1  regucalcin isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:106 → 145
      7WD40; WD40 repeat [structural motif]
      pfam08450
      Location:17 → 264
      SGL; SMP-30/Gluconolaconase/LRE-like region

    8. XM_032680657.1 → XP_032536548.1  regucalcin isoform X6

      Conserved Domains (2) summary
      sd00039
      Location:106 → 145
      7WD40; WD40 repeat [structural motif]
      pfam08450
      Location:17 → 264
      SGL; SMP-30/Gluconolaconase/LRE-like region

    9. XM_032680658.1 → XP_032536549.1  regucalcin isoform X6

      Related
      ENSCLNP00000003127.1, ENSCLNT00000003343.1
      Conserved Domains (2) summary
      sd00039
      Location:106 → 145
      7WD40; WD40 repeat [structural motif]
      pfam08450
      Location:17 → 264
      SGL; SMP-30/Gluconolaconase/LRE-like region
    Nucleotide Protein
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