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    rassf4 Ras association domain family member 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100101777, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rassf4provided by Xenbase
    Official Full Name
    Ras association domain family member 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-493110
    See related
    Ensembl:ENSXETG00000023554 AllianceGenome:Xenbase:XB-GENE-493110
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ad037
    Summary
    Predicted to be involved in signal transduction. Orthologous to human RASSF4 (Ras association domain family member 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rassf4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (63271055..63359827)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (38144111..38236925)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105947770 Neighboring gene transmembrane protein 72 Neighboring gene growth-regulated alpha protein Neighboring gene uncharacterized LOC105947772 Neighboring gene polyamine oxidase (exo-N4-amino) Neighboring gene mitochondrial ribosome-associated GTPase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ras association domain-containing protein 4
    Names
    Ras association (RalGDS/AF-6) domain family 4
    Ras association (RalGDS/AF-6) domain family member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100272.1 → NP_001093742.1  ras association domain-containing protein 4

      See identical proteins and their annotated locations for NP_001093742.1

      Status: PROVISIONAL

      Source sequence(s)
      BC136129
      UniProtKB/TrEMBL
      A4IIR9, F6SPS9, F6V3K8
      Related
      ENSXETP00000050823.2, ENSXETT00000050823.4
      Conserved Domains (2) summary
      cd17222
      Location:164 → 250
      RA_RASSF4; Ras-associating (RA) domain found in Ras-association domain-containing protein 4 (RASSF4)
      pfam16517
      Location:265 → 303
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      63271055..63359827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031904745.1 → XP_031760605.1  ras association domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8J1JU89
      Conserved Domains (2) summary
      pfam16517
      Location:231 → 269
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl28922
      Location:166 → 216
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_012965863.3 → XP_012821317.1  ras association domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_012821317.1

      UniProtKB/TrEMBL
      A4IIR9, F6SPS9, F6V3K8
      Conserved Domains (2) summary
      cd17222
      Location:164 → 250
      RA_RASSF4; Ras-associating (RA) domain found in Ras-association domain-containing protein 4 (RASSF4)
      pfam16517
      Location:265 → 303
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain

    3. XM_031904744.1 → XP_031760604.1  ras association domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A4IIR9, F6SPS9, F6V3K8
      Conserved Domains (2) summary
      cd17222
      Location:164 → 250
      RA_RASSF4; Ras-associating (RA) domain found in Ras-association domain-containing protein 4 (RASSF4)
      pfam16517
      Location:265 → 303
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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