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    LOC116000520 soluble starch synthase 1, chloroplastic/amyloplastic [ Ipomoea triloba (trilobed morning glory) ]

    Gene ID: 116000520, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC116000520
    Gene description
    soluble starch synthase 1, chloroplastic/amyloplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ipomoea triloba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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    Genomic context

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    See LOC116000520 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM357664v1 (GCF_003576645.1) 12 NC_044927.1 (27425484..27429896)

    Chromosome 12 - NC_044927.1Genomic Context describing neighboring genes Neighboring gene protein DEFECTIVE IN MERISTEM SILENCING 3-like Neighboring gene protein IQ-DOMAIN 14-like Neighboring gene phytolongin Phyl2.1 Neighboring gene PP2A regulatory subunit TAP46

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044927.1 Chromosome 12 Reference ASM357664v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    soluble starch synthase 1, chloroplastic/amyloplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ipomoea triloba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM357664v1 Primary Assembly

    Genomic

    1. NC_044927.1 Reference ASM357664v1 Primary Assembly

      Range
      27425484..27429896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031240610.1 → XP_031096470.1  soluble starch synthase 1, chloroplastic/amyloplastic

      Conserved Domains (1) summary
      cd03791
      Location:149 → 648
      GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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