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    Y61A9LA.3 ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178848, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Y61A9LA.3
    Official Full Name
    ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein
    Primary source
    WormBase:WBGene00022015
    Locus tag
    CELE_Y61A9LA.3
    See related
    AllianceGenome:WB:WBGene00022015
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y61A9LA.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    16
    Sequence:
    Chromosome: V; NC_003283.11 (4571133..4585172)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene GED domain-containing protein Neighboring gene Zinc finger CCCH domain-containing protein 14 Neighboring gene Uncharacterized protein Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene ncRNA Neighboring gene transcellular chaperone signaling (x)cross tissue

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional genomic analysis of RNA interference in C. elegans. Kim JK, et al. Science, 2005 May 20. PMID 15790806
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ALO domain-containing protein;Autophagy-related protein 101;C2H2-type domain-containing protein;NR LBD domain-containing protein
    NP_001338802.1
    • Confirmed by transcript evidence
    NP_001338841.1
    • Confirmed by transcript evidence
    NP_001338842.1
    • Confirmed by transcript evidence
    NP_001338843.1
    • Partially confirmed by transcript evidence
    NP_504241.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4571133..4585172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071840.4 → NP_504241.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504241.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L071
      Conserved Domains (3) summary
      pfam05672
      Location:413 → 524
      MAP7; MAP7 (E-MAP-115) family
      cd16269
      Location:480 → 491
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:423 → 509
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. NM_001351865.5 → NP_001338802.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MXS5
      Conserved Domains (1) summary
      cl25742
      Location:415 → 526
      ERM; Ezrin/radixin/moesin family

    3. NM_001351866.4 → NP_001338843.1  NR LBD domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RCX1

    4. NM_001351867.3 → NP_001338841.1  Autophagy-related protein 101 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBU1

    5. NM_001351868.3 → NP_001338842.1  ALO domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBQ5

    RNA

    1. NR_147823.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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