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    ttc-36 Tetratricopeptide repeat protein 36 [ Caenorhabditis elegans ]

    Gene ID: 174562, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttc-36
    Official Full Name
    Tetratricopeptide repeat protein 36
    Primary source
    WormBase:WBGene00009947
    Locus tag
    CELE_F52H3.5
    See related
    AllianceGenome:WB:WBGene00009947
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in tyrosine metabolic process. Is expressed in hypodermis; intestine; and pharynx. Orthologous to human TTC36 (tetratricopeptide repeat domain 36). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ttc-36 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (10030190..10030970)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serine/threonine-protein phosphatase Neighboring gene ncRNA Neighboring gene Protein MTO1 homolog, mitochondrial Neighboring gene Procollagen-lysine,2-oxoglutarate 5-dioxygenase Neighboring gene SPK domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chaperone-interacting TPR proteins in Caenorhabditis elegans. Haslbeck V, et al. J Mol Biol, 2013 Aug 23. PMID 23727266
    2. The non-canonical Hop protein from Caenorhabditis elegans exerts essential functions and forms binary complexes with either Hsc70 or Hsp90. Gaiser AM, et al. J Mol Biol, 2009 Aug 21. PMID 19559711
    3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    4. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
    5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in tyrosine metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat protein 36
    NP_496168.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10030190..10030970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063767.4 → NP_496168.1  Tetratricopeptide repeat protein 36 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496168.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q20683
      Conserved Domains (3) summary
      sd00006
      Location:46 → 71
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:77 → 106
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:43 → 107
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q20683.1

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