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    NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843364, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT1G70280
    Locus tag
    AT1G70280
    See related
    Araport:AT1G70280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17O7.19; F17O7_19
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26465804..26468804, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene transcription factor Neighboring gene trehalose-6-phosphatase synthase S8 Neighboring gene K+ uptake permease 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105696.4
    NM_180643.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NHL domain-containing protein
    NP_177185.3
    • NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins in 426 species: Archae - 63; Bacteria - 1459; Metazoa - 1476; Fungi - 468; Plants - 264; Viruses - 2; Other Eukaryotes - 3470 (source: NCBI BLink).
    NP_850974.1
    • NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G23880.1); Has 7288 Blast hits to 4121 proteins in 430 species: Archae - 61; Bacteria - 1521; Metazoa - 1473; Fungi - 465; Plants - 266; Viruses - 2; Other Eukaryotes - 3500 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26465804..26468804 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105696.4 → NP_177185.3  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177185.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAL5, A0A654ESW2, F4I5D7
      Conserved Domains (2) summary
      cd05819
      Location:85 → 127
      NHL; NHL repeat [structural motif]
      cl18310
      Location:85 → 226
      NHL; NHL repeat unit of beta-propeller proteins

    2. NM_180643.1 → NP_850974.1  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850974.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O64609, Q8W4B0
      Conserved Domains (2) summary
      cd05819
      Location:23 → 65
      NHL; NHL repeat [structural motif]
      cl18310
      Location:23 → 164
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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