NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001297563.2 → NP_001284492.1 transcription elongation factor A N-terminal and central domain-containing protein isoform 2
See identical proteins and their annotated locations for NP_001284492.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains an additional exon in the 5' UTR which results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
- Source sequence(s)
-
AC079383, AK291271, BC020095
- Consensus CDS
-
CCDS75954.1
- UniProtKB/Swiss-Prot
- A6NI06, B2RDM3, Q8N8B7
- UniProtKB/TrEMBL
-
A0A8Q3SID2
- Related
- ENSP00000512421.1, ENST00000696128.1
- Conserved Domains (4) summary
-
- TIGR01385
Location:6 → 343
- TFSII; transcription elongation factor S-II
- pfam07500
Location:172 → 278
- TFIIS_M; Transcription factor S-II (TFIIS), central domain
- pfam08711
Location:29 → 78
- Med26; TFIIS helical bundle-like domain
- cl02609
Location:289 → 343
- Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
-
NM_001297564.2 → NP_001284493.1 transcription elongation factor A N-terminal and central domain-containing protein isoform 2
See identical proteins and their annotated locations for NP_001284493.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an exon in the 5' UTR and coding region which results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
- Source sequence(s)
-
AC079383, AK315599, BC020095
- Consensus CDS
-
CCDS75954.1
- UniProtKB/Swiss-Prot
- A6NI06, B2RDM3, Q8N8B7
- UniProtKB/TrEMBL
-
A0A8Q3SID2
- Related
- ENSP00000369974.1, ENST00000380600.2
- Conserved Domains (4) summary
-
- TIGR01385
Location:6 → 343
- TFSII; transcription elongation factor S-II
- pfam07500
Location:172 → 278
- TFIIS_M; Transcription factor S-II (TFIIS), central domain
- pfam08711
Location:29 → 78
- Med26; TFIIS helical bundle-like domain
- cl02609
Location:289 → 343
- Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
-
NM_152634.4 → NP_689847.2 transcription elongation factor A N-terminal and central domain-containing protein isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC079383, AK294465, BC020095
- Consensus CDS
-
CCDS48081.1
- UniProtKB/TrEMBL
-
B4DG85
- Related
- ENSP00000440038.2, ENST00000544987.3
- Conserved Domains (4) summary
-
- TIGR01385
Location:36 → 373
- TFSII; transcription elongation factor S-II
- pfam07500
Location:202 → 308
- TFIIS_M; Transcription factor S-II (TFIIS), central domain
- pfam08711
Location:59 → 108
- Med26; TFIIS helical bundle-like domain
- cl02609
Location:319 → 373
- Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
13653141..13665409
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029316.2 → XP_016884805.1 transcription elongation factor A N-terminal and central domain-containing protein isoform X1
- UniProtKB/TrEMBL
-
B4DG85
- Conserved Domains (4) summary
-
- TIGR01385
Location:36 → 373
- TFSII; transcription elongation factor S-II
- pfam07500
Location:202 → 308
- TFIIS_M; Transcription factor S-II (TFIIS), central domain
- pfam08711
Location:59 → 108
- Med26; TFIIS helical bundle-like domain
- cl02609
Location:319 → 373
- Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
13234528..13246800
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326596.1 → XP_054182571.1 transcription elongation factor A N-terminal and central domain-containing protein isoform X1
- UniProtKB/TrEMBL
-
B4DG85