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    LOC109788688 protein TIFY 10B [ Cajanus cajan (pigeon pea) ]

    Gene ID: 109788688, updated on 28-Dec-2024

    Summary

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    Gene symbol
    LOC109788688
    Gene description
    protein TIFY 10B
    Locus tag
    KK1_039218
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cajanus cajan
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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    Genomic context

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    See LOC109788688 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017984555.1 (38009..40733)

    NW_017984555.1Genomic Context describing neighboring genes Neighboring gene FCS-Like Zinc finger 13 Neighboring gene beta-galactosidase 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_017984555 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 10B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.cajan_V1.0 Primary Assembly

    Genomic

    1. NW_017984555.1 Reference C.cajan_V1.0 Primary Assembly

      Range
      38009..40733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020347474.2 → XP_020203063.1  protein TIFY 10B

      UniProtKB/TrEMBL
      A0A151R9Z7
      Conserved Domains (2) summary
      pfam06200
      Location:116 → 148
      tify; tify domain
      pfam09425
      Location:212 → 236
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version

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