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    EXPA15 expansin A15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814838, updated on 18-Sep-2024

    Summary

    Official Symbol
    EXPA15
    Official Full Name
    expansin A15
    Primary source
    TAIR:AT2G03090
    Locus tag
    AT2G03090
    See related
    Araport:AT2G03090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXP15; ATEXPA15; ATHEXP ALPHA 1.3; EXP15; EXPANSIN 15; expansin A15; T17M13.26; T17M13_26
    Summary
    member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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    Genomic context

    See EXPA15 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (916806..918671, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene mediator subunit 8 Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene pseudo

    General gene information

    NM_126361.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region  

    General protein information

    Preferred Names
    expansin A15
    NP_178409.2
    • expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      916806..918671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126361.4 → NP_178409.2  expansin A15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178409.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80622, Q8VYD1
      UniProtKB/TrEMBL
      A0A178VZP8, A0A384LDZ7, A0A654ET26, A1KXV8
      Conserved Domains (1) summary
      PLN00050
      Location:6 → 252
      PLN00050; expansin A; Provisional
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