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    hydrolases, acting on ester bond [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822352, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hydrolases, acting on ester bond
    Primary source
    TAIR:AT3G27325
    Locus tag
    AT3G27325
    See related
    Araport:AT3G27325
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (10095015..10102423)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPGAP1 functions as a GPI inositol-deacylase required for efficient transport of GPI-anchored proteins. Bernat-Silvestre C, et al. Plant Physiol, 2021 Dec 4. PMID 34618080, Free PMC Article
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203057.2
    NM_001338868.1
    NM_113647.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol deacylase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within GPI anchor metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    hydrolases, acting on ester bond
    NP_001189986.1
    • hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908).
    NP_189368.5
    • hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908); Has 338 Blast hits to 334 proteins in 168 species: Archae - 0; Bacteria - 16; Metazoa - 103; Fungi - 147; Plants - 45; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10095015..10102423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113647.6 → NP_189368.5  hydrolases, acting on ester bond [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189368.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI83, A0A384L3E7, A0A7G2ELU4, F4IWG3
      Conserved Domains (1) summary
      pfam07819
      Location:85 → 360
      PGAP1; PGAP1-like protein

    2. NM_001203057.2 → NP_001189986.1  hydrolases, acting on ester bond [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189986.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGE4, A0A384L5L1, A0A654FBE3, F4IWG2
      Conserved Domains (1) summary
      pfam07819
      Location:121 → 396
      PGAP1; PGAP1-like protein

    3. NM_001338868.1 → NP_001325762.1  hydrolases, acting on ester bond [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGE4, A0A384L5L1, A0A654FBE3, F4IWG2
      Conserved Domains (1) summary
      pfam07819
      Location:121 → 396
      PGAP1; PGAP1-like protein
    Nucleotide Protein
    Heading Accession and Version

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