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    NEFA-interacting nuclear protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825387, updated on 18-Sep-2024

    Summary

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    Official Full Name
    NEFA-interacting nuclear protein
    Primary source
    TAIR:AT3G62140
    Locus tag
    AT3G62140
    See related
    Araport:AT3G62140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (23007083..23008749)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene P-glycoprotein 21 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene VANGUARD-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116079.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NEFA-interacting nuclear protein
    NP_191773.2
    • CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23007083..23008749
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116079.2 → NP_191773.2  NEFA-interacting nuclear protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191773.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VB02, A0A384K8N1, A0A5S9XMY8, Q5XV94
      Conserved Domains (1) summary
      pfam10187
      Location:14 → 102
      Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30
    Nucleotide Protein
    Heading Accession and Version

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