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    Transcription factor jumonji (jmjC) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837747, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor jumonji (jmjC) domain-containing protein
    Primary source
    TAIR:AT1G11950
    Locus tag
    AT1G11950
    See related
    Araport:AT1G11950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.18; F12F1_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (4034479..4039065, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Putative pyridoxal phosphate-dependent enzyme, YBL036C type Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. Shang JY, et al. Plant Cell, 2021 Oct 11. PMID 34270751, Free PMC Article
    2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101067.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor jumonji (jmjC) domain-containing protein
    NP_172659.3
    • Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4034479..4039065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332013.1 → NP_001322575.1  Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WJ43, C0SUU8, O65384
      UniProtKB/TrEMBL
      A0A384KZA5, A0A5S9TXB6
      Conserved Domains (3) summary
      PTZ00121
      Location:29 → 122
      PTZ00121; MAEBL; Provisional
      smart00558
      Location:599 → 672
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl40423
      Location:721 → 820
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. NM_001332012.1 → NP_001322574.1  Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUH1, A0A5S9TXB6

    3. NM_101067.6 → NP_172659.3  Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172659.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WJ43, C0SUU8, O65384
      UniProtKB/TrEMBL
      A0A384KZA5, A0A5S9TXB6
      Conserved Domains (3) summary
      PTZ00121
      Location:29 → 122
      PTZ00121; MAEBL; Provisional
      smart00558
      Location:599 → 672
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl40423
      Location:721 → 820
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein
    Heading Accession and Version

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