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    PNAS-3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817074, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PNAS-3-like protein
    Primary source
    TAIR:AT2G25355
    Locus tag
    AT2G25355
    See related
    Araport:AT2G25355
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (10801091..10803722)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene low-molecular-weight cysteine-rich 14 Neighboring gene Phox (PX) domain-containing protein Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. Lange H, et al. PLoS Genet, 2014 Aug. PMID 25144737, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084489.1
    NM_128093.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PNAS-3-like protein
    NP_001077958.1
    • PNAS-3 related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT4G32175.1); Has 398 Blast hits to 398 proteins in 199 species: Archae - 22; Bacteria - 0; Metazoa - 114; Fungi - 132; Plants - 59; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    NP_565592.1
    • PNAS-3 related; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT4G32175.1); Has 410 Blast hits to 410 proteins in 205 species: Archae - 27; Bacteria - 0; Metazoa - 113; Fungi - 136; Plants - 59; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10801091..10803722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128093.3 → NP_565592.1  PNAS-3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565592.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VR99, A0A654EW02, Q94AW9
      Conserved Domains (3) summary
      cd05790
      Location:71 → 156
      S1_Rrp40; Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
      pfam18311
      Location:34 → 71
      Rrp40_N; Exosome complex exonuclease Rrp40 N-terminal domain
      cd22526
      Location:158 → 236
      KH-I_Rrp40; type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins

    2. NM_001084489.1 → NP_001077958.1  PNAS-3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077958.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EW02, A8MQZ8
      Conserved Domains (2) summary
      cd05790
      Location:43 → 128
      S1_Rrp40; S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation ...
      pfam15985
      Location:131 → 176
      KH_6; KH domain
    Nucleotide Protein
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