U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    EMS1 Leucine-rich repeat transmembrane protein kinase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830619, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EMS1
    Official Full Name
    Leucine-rich repeat transmembrane protein kinase
    Primary source
    TAIR:AT5G07280
    Locus tag
    AT5G07280
    See related
    Araport:AT5G07280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EXCESS MICROSPOROCYTES1; EXS; EXTRA SPOROGENOUS CELLS; T28J14.220; T28J14_220
    Summary
    Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EMS1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (2284830..2288855)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene START (StAR-related lipid-transfer) lipid-binding domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene MEI2-like 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The excess microsporocytes1 gene encodes a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in the Arabidopsis anther. Zhao DZ, et al. Genes Dev, 2002 Aug 1. PMID 12154130, Free PMC Article
    2. EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation. Zheng B, et al. Nat Commun, 2019 Sep 13. PMID 31519884, Free PMC Article
    3. Control of Anther Cell Differentiation by the Small Protein Ligand TPD1 and Its Receptor EMS1 in Arabidopsis. Huang J, et al. PLoS Genet, 2016 Aug. PMID 27537183, Free PMC Article
    4. Signaling of cell fate determination by the TPD1 small protein and EMS1 receptor kinase. Jia G, et al. Proc Natl Acad Sci U S A, 2008 Feb 12. PMID 18250314, Free PMC Article
    5. Overexpression of TAPETUM DETERMINANT1 alters the cell fates in the Arabidopsis carpel and tapetum via genetic interaction with excess microsporocytes1/extra sporogenous cells. Yang SL, et al. Plant Physiol, 2005 Sep. PMID 16055681, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation
      Title: EMS1 and BRI1 control separate biological processes via extracellular domain diversity and intracellular domain conservation.
    2. these data provide genetic and biochemical evidence of the interaction and phosphorylation between SERK1/2 and EMS1 in anther development.
      Title: Two SERK Receptor-Like Kinases Interact with EMS1 to Control Anther Cell Fate Determination.
    3. Analyses of the expressions and localizations of TPD1 and EMS1, ectopic expression of TPD1, experimental missorting of TPD1, and ablation of microsporocytes yielded results suggesting that the precursors of microsporocyte/microsporocyte-derived TPD1 and pre-tapetal-cell-localized EMS1 initially promote the periclinal division of secondary parietal cells and then determine one of the two daughter cells
      Title: Control of Anther Cell Differentiation by the Small Protein Ligand TPD1 and Its Receptor EMS1 in Arabidopsis.
    4. Genetic analysis showed that the activation of cell division in the transgenic carpels of A. thaliana by TPD1 was dependent on EMS1/EXS, as it did not happen in the ems1/exs mutant.
      Title: Overexpression of TAPETUM DETERMINANT1 alters the cell fates in the Arabidopsis carpel and tapetum via genetic interaction with excess microsporocytes1/extra sporogenous cells.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_120810.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane receptor protein kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther wall tapetum cell fate specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within microsporogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Leucine-rich repeat transmembrane protein kinase
    NP_196345.1
    • EXCESS MICROSPOROCYTES1 (EMS1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2284830..2288855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120810.3 → NP_196345.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196345.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0LGS9, Q8GSM5, Q9LYN8
      UniProtKB/TrEMBL
      A0A178UL02, A0A654FZ50
      Conserved Domains (3) summary
      PLN03150
      Location:224 → 307
      PLN03150; hypothetical protein; Provisional
      PLN00113
      Location:30 → 1190
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:546 → 578
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYN8.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools