U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    EICBP.B ethylene induced calmodulin binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830800, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EICBP.B
    Official Full Name
    ethylene induced calmodulin binding protein
    Primary source
    TAIR:AT5G09410
    Locus tag
    AT5G09410
    See related
    Araport:AT5G09410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    calmodulin-binding transcription activator 1; CAMTA1; ethylene induced calmodulin binding protein; T5E8.210; T5E8_210
    Summary
    calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EICBP.B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Sequence:
    Chromosome: 5; NC_003076.8 (2920827..2927480)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CD2-binding protein-like protein Neighboring gene K+ uptake permease 7 Neighboring gene translocon at the outer membrane of chloroplasts 64-V Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene EXORDIUM like 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. CAMTA 1 regulates drought responses in Arabidopsis thaliana. Pandey N, et al. BMC Genomics, 2013 Apr 2. PMID 23547968, Free PMC Article
    2. Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis. Galon Y, et al. Planta, 2010 Jun. PMID 20383645
    3. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Doherty CJ, et al. Plant Cell, 2009 Mar. PMID 19270186, Free PMC Article
    4. Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes. Kim Y, et al. Mol Plant, 2020 Jan 6. PMID 31733370
    5. Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis. Kim Y, et al. Plant J, 2013 Aug. PMID 23581962

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes.
      Title: Arabidopsis CAMTA Transcription Factors Regulate Pipecolic Acid Biosynthesis and Priming of Immunity Genes.
    2. CAMTA1, CAMTA2 and CAMTA3 function together to inhibit salicylic acid biosynthesis at warm temperature (22 degrees C).CAMTA1, CAMTA2 and CAMTA3 function together to positively regulate CBF1, CBF2 and CBF3 and freezing tolerance.
      Title: Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis.
    3. CAMTA1 regulates several stress responsive genes including RD26, ERD7, RAB18, LTPs, COR78, CBF1, HSPs etc. and promoter of these genes were enriched with CAMTA recognition cis-element.
      Title: CAMTA 1 regulates drought responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001125723.2
    NM_001343050.1
    NM_120978.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables calmodulin binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in response to auxin IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to freezing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to freezing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ethylene induced calmodulin binding protein
    NP_001119195.1
    • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190267.1
    • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2).
    NP_196503.3
    • ethylene induced calmodulin binding protein (EICBP.B); FUNCTIONS IN: calmodulin binding, transcription regulator activity, transcription activator activity; INVOLVED IN: response to freezing; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (TAIR:AT5G64220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2920827..2927480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203338.1 → NP_001190267.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190267.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y2P2, A0A654FZM2, F4KCL4
      Conserved Domains (6) summary
      PTZ00322
      Location:679 → 813
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      smart00015
      Location:903 → 924
      IQ; Calmodulin-binding motif
      sd00045
      Location:671 → 702
      ANK; ANK repeat [structural motif]
      pfam01833
      Location:471 → 550
      TIG; IPT/TIG domain
      pfam03859
      Location:84 → 226
      CG-1; CG-1 domain
      pfam12796
      Location:651 → 730
      Ank_2; Ankyrin repeats (3 copies)

    2. NM_001125723.2 → NP_001119195.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119195.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KCL6, Q0WQF9, Q9FY74
      UniProtKB/TrEMBL
      A0A178UKF0
      Conserved Domains (6) summary
      PTZ00322
      Location:620 → 754
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      smart00015
      Location:844 → 865
      IQ; Calmodulin-binding motif
      sd00045
      Location:612 → 643
      ANK; ANK repeat [structural motif]
      pfam01833
      Location:412 → 491
      TIG; IPT/TIG domain
      pfam03859
      Location:26 → 138
      CG-1; CG-1 domain
      pfam12796
      Location:592 → 671
      Ank_2; Ankyrin repeats (3 copies)

    3. NM_120978.5 → NP_196503.3  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196503.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKF0
      Conserved Domains (6) summary
      smart00015
      Location:826 → 847
      IQ; Calmodulin-binding motif
      cd00204
      Location:583 → 686
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:394 → 473
      TIG; IPT/TIG domain
      pfam03859
      Location:24 → 138
      CG-1; CG-1 domain
      pfam13637
      Location:598 → 648
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:594 → 625
      ANK; ANK repeat [structural motif]

    4. NM_001343050.1 → NP_001331994.1  ethylene induced calmodulin binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMW2, A0A1P8BFI4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FY74.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.