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    scpl20 serine carboxypeptidase-like 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826903, updated on 18-Sep-2024

    Summary

    Official Symbol
    scpl20
    Official Full Name
    serine carboxypeptidase-like 20
    Primary source
    TAIR:AT4G12910
    Locus tag
    AT4G12910
    See related
    Araport:AT4G12910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25G13.7; F25G13_7; serine carboxypeptidase-like 20
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    Genomic context

    See scpl20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Sequence:
    Chromosome: 4; NC_003075.7 (7550238..7553375, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 19 Neighboring gene Gamma interferon responsive lysosomal thiol (GILT) reductase family protein Neighboring gene Gamma interferon responsive lysosomal thiol (GILT) reductase family protein Neighboring gene pseudo Neighboring gene ncRNA

    General gene information

    NM_001340813.1
    NM_117360.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
     
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

    Preferred Names
    serine carboxypeptidase-like 20
    NP_193027.5
    • serine carboxypeptidase-like 20 (scpl20); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 21 (TAIR:AT3G25420.1); Has 4118 Blast hits to 3857 proteins in 425 species: Archae - 0; Bacteria - 294; Metazoa - 699; Fungi - 932; Plants - 1620; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7550238..7553375 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117360.8NP_193027.5  serine carboxypeptidase-like 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193027.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7B2, Q9SV78
      UniProtKB/TrEMBL
      A0A5S9XRS9
      Conserved Domains (1) summary
      pfam00450
      Location:39494
      Peptidase_S10; Serine carboxypeptidase
    2. NM_001340813.1NP_001329616.1  serine carboxypeptidase-like 20 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B894, A0A5S9XRS9