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    sks13 SKU5 similar 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820540, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sks13
    Official Full Name
    SKU5 similar 13
    Primary source
    TAIR:AT3G13400
    Locus tag
    AT3G13400
    See related
    Araport:AT3G13400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKU5 similar 13; SKU5 similar 13
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    Genomic context

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    See sks13 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (4354923..4357482)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BRI1-like 3 Neighboring gene SKU5 similar 11 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pollen-specific gene SKU5-SIMILAR 13 enhances growth of pollen tubes in the transmitting tract in Arabidopsis. Zhang MJ, et al. J Exp Bot, 2022 Jan 27. PMID 34626184
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338046.1
    NM_112185.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SKU5 similar 13
    NP_001319540.1
    • SKU5 similar 13 (sks13); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 14 (TAIR:AT1G55560.1); Has 5231 Blast hits to 5185 proteins in 974 species: Archae - 4; Bacteria - 1633; Metazoa - 272; Fungi - 1906; Plants - 1265; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4354923..4357482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338046.1 → NP_001319540.1  SKU5 similar 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFS1, A0A5S9XC92, A0A654FGX9, Q9LJF1
      Conserved Domains (1) summary
      PLN02354
      Location:1 → 551
      PLN02354; copper ion binding / oxidoreductase

    2. NM_112185.3 → NP_187948.1  SKU5 similar 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187948.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFS1, A0A5S9XC92, A0A654FGX9, Q9LJF1
      Conserved Domains (1) summary
      PLN02354
      Location:1 → 551
      PLN02354; copper ion binding / oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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