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    ATRER1A Rer1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830077, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATRER1A
    Official Full Name
    Rer1 family protein
    Primary source
    TAIR:AT4G39220
    Locus tag
    AT4G39220
    See related
    Araport:AT4G39220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22F8.120; T22F8_120
    Summary
    Key player of retrieval of ER membrane proteins
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    Genomic context

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    See ATRER1A in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (18263599..18265771)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S25 family protein Neighboring gene Glucose-1-phosphate adenylyltransferase family protein Neighboring gene NmrA-like negative transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RAD-like 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Membrane protein retrieval from the Golgi apparatus to the endoplasmic reticulum (ER): characterization of the RER1 gene product as a component involved in ER localization of Sec12p. Sato K, et al. Mol Biol Cell, 1995 Nov. PMID 8589449, Free PMC Article
    2. The Arabidopsis thaliana RER1 gene family: its potential role in the endoplasmic reticulum localization of membrane proteins. Sato K, et al. Plant Mol Biol, 1999 Dec. PMID 10737146
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_120082.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rer1 family protein
    NP_195633.1
    • ATRER1A; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 516 Blast hits to 513 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 150; Plants - 130; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18263599..18265771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342528.1 → NP_001329643.1  Rer1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48670
      UniProtKB/TrEMBL
      A0A178UZZ3, A0A5S9Y0A2
      Conserved Domains (1) summary
      pfam03248
      Location:17 → 181
      Rer1; Rer1 family

    2. NM_120082.4 → NP_195633.1  Rer1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195633.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48670
      UniProtKB/TrEMBL
      A0A178UZZ3, A0A5S9Y0A2
      Conserved Domains (1) summary
      pfam03248
      Location:17 → 181
      Rer1; Rer1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48670.1

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