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    PAX2 paired box 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710687, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PAX2provided by VGNC
    Official Full Name
    paired box 2provided by VGNC
    Primary source
    VGNC:VGNC:75761
    See related
    Ensembl:ENSMMUG00000009163
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PAX2 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (101205856..101299796)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (96372924..96477441)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene uncharacterized LOC114670023 Neighboring gene uncharacterized LOC114670024 Neighboring gene SMC5-SMC6 complex localization factor 2 Neighboring gene semaphorin 4G Neighboring gene mitochondrial ribosomal protein L43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired box protein Pax-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      101205856..101299796
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826770.1 → XP_028682603.1  paired box protein Pax-2 isoform X5

      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:336 → 387
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:286 → 309
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    2. XM_015147957.2 → XP_015003443.2  paired box protein Pax-2 isoform X2

      UniProtKB/TrEMBL
      G7N0X9
      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:336 → 394
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:286 → 309
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    3. XM_015147956.2 → XP_015003442.2  paired box protein Pax-2 isoform X2

      UniProtKB/TrEMBL
      G7N0X9
      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:336 → 394
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:286 → 309
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    4. XM_015147960.2 → XP_015003446.2  paired box protein Pax-2 isoform X6

      UniProtKB/TrEMBL
      G7N0X9
      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:313 → 371
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:263 → 286
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    5. XM_015147958.2 → XP_015003444.2  paired box protein Pax-2 isoform X3

      UniProtKB/TrEMBL
      G7N0X9
      Related
      ENSMMUP00000012017.4, ENSMMUT00000012816.4
      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:336 → 446
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:286 → 309
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    6. XM_015147955.2 → XP_015003441.2  paired box protein Pax-2 isoform X1

      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:336 → 421
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:286 → 309
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    7. XM_015147961.2 → XP_015003447.2  paired box protein Pax-2 isoform X7

      UniProtKB/TrEMBL
      G7N0X9
      Related
      ENSMMUP00000015205.4, ENSMMUT00000016223.4
      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:313 → 423
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:263 → 286
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    8. XM_015147959.2 → XP_015003445.2  paired box protein Pax-2 isoform X4

      Conserved Domains (3) summary
      smart00351
      Location:47 → 171
      PAX; Paired Box domain
      pfam12403
      Location:313 → 398
      Pax2_C; Paired-box protein 2 C terminal
      cl00084
      Location:263 → 286
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    Nucleotide Protein
    Heading Accession and Version

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