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    LCOR ligand dependent nuclear receptor corepressor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705646, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LCORprovided by VGNC
    Official Full Name
    ligand dependent nuclear receptor corepressorprovided by VGNC
    Primary source
    VGNC:VGNC:106067
    Locus tag
    EGK_19939
    See related
    Ensembl:ENSMMUG00000010427
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LCOR in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (97274514..97437978)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (92323094..92480826)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene growth/differentiation factor 11-like Neighboring gene microRNA mir-607 Neighboring gene slit guidance ligand 1 Neighboring gene Rho GTPase activating protein 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein C10orf12; ligand-dependent corepressor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      97274514..97437978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015147851.2 → XP_015003337.2  ligand-dependent corepressor isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZKB4, A0A5F7ZL44
      Related
      ENSMMUP00000066072.1, ENSMMUT00000097802.1
      Conserved Domains (3) summary
      PHA03307
      Location:717 → 878
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:842 → 1148
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1236 → 1696
      DUF4553; Domain of unknown function (DUF4553)

    2. XM_028826721.1 → XP_028682554.1  ligand-dependent corepressor isoform X7

      Conserved Domains (1) summary
      pfam05225
      Location:494 → 537
      HTH_psq; helix-turn-helix, Psq domain

    3. XM_015147845.2 → XP_015003331.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Related
      ENSMMUP00000076655.1, ENSMMUT00000080358.1
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    4. XM_015147855.2 → XP_015003341.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Related
      ENSMMUP00000070051.1, ENSMMUT00000106767.1
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    5. XM_015147846.2 → XP_015003332.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    6. XM_015147844.2 → XP_015003330.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    7. XM_028826717.1 → XP_028682550.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    8. XM_028826719.1 → XP_028682552.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)

    9. XM_028826722.1 → XP_028682555.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Related
      ENSMMUP00000013669.3, ENSMMUT00000014589.4
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    10. XM_028826718.1 → XP_028682551.1  ligand-dependent corepressor isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:700 → 861
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:825 → 1131
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1219 → 1679
      DUF4553; Domain of unknown function (DUF4553)

    11. XM_028826715.1 → XP_028682548.1  ligand-dependent corepressor isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (2) summary
      COG5271
      Location:887 → 1193
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1281 → 1741
      DUF4553; Domain of unknown function (DUF4553)

    12. XM_028826720.1 → XP_028682553.1  ligand-dependent corepressor isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZWL8, A0A8J8YBR6, F7CXL8, G7N2N5
      Conserved Domains (1) summary
      pfam05225
      Location:352 → 395
      HTH_psq; helix-turn-helix, Psq domain

    13. XM_028826716.1 → XP_028682549.1  ligand-dependent corepressor isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZL44
      Conserved Domains (3) summary
      PHA03307
      Location:760 → 921
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:885 → 1191
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1279 → 1739
      DUF4553; Domain of unknown function (DUF4553)

    14. XM_015147852.2 → XP_015003338.1  ligand-dependent corepressor isoform X5

      UniProtKB/TrEMBL
      F7EFY1, G7N2N6
      Related
      ENSMMUP00000035753.3, ENSMMUT00000014590.4
      Conserved Domains (3) summary
      PHA03307
      Location:575 → 736
      PHA03307; transcriptional regulator ICP4; Provisional
      COG5271
      Location:700 → 1006
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      pfam15090
      Location:1094 → 1554
      DUF4553; Domain of unknown function (DUF4553)
    Nucleotide Protein
    Heading Accession and Version

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