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    CHD8 chromodomain helicase DNA binding protein 8 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708169, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD8provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 8provided by VGNC
    Primary source
    VGNC:VGNC:71060
    See related
    Ensembl:ENSMMUG00000015002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD8 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (83288278..83356236, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (82633264..82701430, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene RPGR interacting protein 1 Neighboring gene SPT16 homolog, facilitates chromatin remodeling subunit Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene small nucleolar RNA U6-53/MBII-28 Neighboring gene ubiquitin-like Neighboring gene eukaryotic translation initiation factor 4E-binding protein 1 pseudogene Neighboring gene RAB2B, member RAS oncogene family Neighboring gene TOX high mobility group box family member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 8
    XP_001096619.3
    XP_014998731.2
    XP_014998732.2
    XP_014998733.2
    XP_014998737.2
    XP_014998738.2
    XP_028707218.1
    XP_028707219.1
    XP_028707220.1
    XP_028707221.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      83288278..83356236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015143246.2 → XP_014998732.2  chromodomain-helicase-DNA-binding protein 8 isoform X1

      UniProtKB/TrEMBL
      H9EN66
      Conserved Domains (7) summary
      smart00592
      Location:2318 → 2362
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:810 → 1409
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:68 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam10500
      Location:490 → 584
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:721 → 779
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:638 → 703
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18060
      Location:811 → 1032
      DEXHc_CHD8; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 8

    2. XM_015143251.2 → XP_014998737.2  chromodomain-helicase-DNA-binding protein 8 isoform X4

      UniProtKB/TrEMBL
      G7MWS9
      Conserved Domains (6) summary
      smart00592
      Location:2039 → 2083
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:531 → 1130
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam10500
      Location:211 → 305
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:442 → 500
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:359 → 424
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:532 → 753
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_001096619.4 → XP_001096619.3  chromodomain-helicase-DNA-binding protein 8 isoform X5

      UniProtKB/TrEMBL
      G7MWS9
      Conserved Domains (6) summary
      smart00592
      Location:2031 → 2075
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:531 → 1130
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam10500
      Location:211 → 305
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:442 → 500
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:359 → 424
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:532 → 753
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    4. XM_015143245.2 → XP_014998731.2  chromodomain-helicase-DNA-binding protein 8 isoform X1

      UniProtKB/TrEMBL
      H9EN66
      Conserved Domains (7) summary
      smart00592
      Location:2318 → 2362
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:810 → 1409
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:68 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam10500
      Location:490 → 584
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:721 → 779
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:638 → 703
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18060
      Location:811 → 1032
      DEXHc_CHD8; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 8

    5. XM_015143252.2 → XP_014998738.2  chromodomain-helicase-DNA-binding protein 8 isoform X4

      UniProtKB/TrEMBL
      G7MWS9
      Conserved Domains (6) summary
      smart00592
      Location:2039 → 2083
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:531 → 1130
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam10500
      Location:211 → 305
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:442 → 500
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:359 → 424
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:532 → 753
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    6. XM_015143247.2 → XP_014998733.2  chromodomain-helicase-DNA-binding protein 8 isoform X1

      UniProtKB/TrEMBL
      H9EN66
      Conserved Domains (7) summary
      smart00592
      Location:2318 → 2362
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:810 → 1409
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:68 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam10500
      Location:490 → 584
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:721 → 779
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:638 → 703
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18060
      Location:811 → 1032
      DEXHc_CHD8; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 8

    7. XM_028851386.1 → XP_028707219.1  chromodomain-helicase-DNA-binding protein 8 isoform X3

      UniProtKB/TrEMBL
      A0A5F8A229
      Related
      ENSMMUP00000070951.1, ENSMMUT00000088254.1
      Conserved Domains (7) summary
      smart00592
      Location:2327 → 2367
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:810 → 1409
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:68 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam10500
      Location:490 → 584
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:721 → 779
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:638 → 703
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18060
      Location:811 → 1032
      DEXHc_CHD8; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 8

    8. XM_028851385.1 → XP_028707218.1  chromodomain-helicase-DNA-binding protein 8 isoform X2

      UniProtKB/TrEMBL
      F7GN20, H9EN66, H9ZBQ7
      Related
      ENSMMUP00000033135.3, ENSMMUT00000040064.3
      Conserved Domains (7) summary
      smart00592
      Location:2310 → 2354
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:810 → 1409
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      PHA03247
      Location:68 → 280
      PHA03247; large tegument protein UL36; Provisional
      pfam10500
      Location:490 → 584
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:721 → 779
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:638 → 703
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18060
      Location:811 → 1032
      DEXHc_CHD8; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 8

    9. XM_028851387.1 → XP_028707220.1  chromodomain-helicase-DNA-binding protein 8 isoform X4

      UniProtKB/TrEMBL
      G7MWS9
      Conserved Domains (6) summary
      smart00592
      Location:2039 → 2083
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:531 → 1130
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam10500
      Location:211 → 305
      SR-25; Nuclear RNA-splicing-associated protein
      cd18663
      Location:442 → 500
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:359 → 424
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:532 → 753
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    10. XM_028851388.1 → XP_028707221.1  chromodomain-helicase-DNA-binding protein 8 isoform X6

      UniProtKB/TrEMBL
      G7MWS9
      Conserved Domains (5) summary
      smart00592
      Location:1747 → 1791
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:239 → 838
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:150 → 208
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:67 → 132
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:240 → 461
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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