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    CHD1 chromodomain helicase DNA binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702070, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD1provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:71026
    See related
    Ensembl:ENSMMUG00000014090
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (96224757..96301945, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (95796611..95871528, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106998871 Neighboring gene uncharacterized LOC106998872

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 1
    XP_001097125.1
    XP_028705438.1
    XP_028705439.1
    XP_028705440.1
    XP_028705441.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      96224757..96301945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028849605.1 → XP_028705438.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QDQ5
      Conserved Domains (6) summary
      PLN03142
      Location:470 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam08648
      Location:1678 → 1787
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1510 → 1592
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:393 → 449
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:282 → 360
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:466 → 703
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. XM_028849606.1 → XP_028705439.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZGM0
      Conserved Domains (6) summary
      PLN03142
      Location:466 → 1002
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam08648
      Location:1674 → 1783
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1506 → 1588
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:389 → 445
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:278 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:462 → 699
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_001097125.4 → XP_001097125.1  chromodomain-helicase-DNA-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RAG7, A0A5F7ZGM0
      Related
      ENSMMUP00000057308.2, ENSMMUT00000073038.2
      Conserved Domains (8) summary
      cd00024
      Location:308 → 357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:502 → 647
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:486 → 767
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:805 → 904
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:392 → 445
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam08648
      Location:1557 → 1659
      DUF1777; Protein of unknown function (DUF1777)
      pfam11496
      Location:720 → 973
      HDA2-3; Class II histone deacetylase complex subunits 2 and 3
      pfam13907
      Location:1409 → 1500
      DUF4208; Domain of unknown function (DUF4208)

    4. XM_028849607.1 → XP_028705440.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A1D5QDQ5, F7C8A6
      Related
      ENSMMUP00000018527.4, ENSMMUT00000019790.4
      Conserved Domains (7) summary
      PLN03142
      Location:470 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam05110
      Location:1287 → 1407
      AF-4; AF-4 proto-oncoprotein
      pfam08648
      Location:1590 → 1699
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1422 → 1504
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:393 → 449
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:282 → 360
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:466 → 703
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    5. XM_028849608.1 → XP_028705441.1  chromodomain-helicase-DNA-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QDQ5
      Conserved Domains (5) summary
      PLN03142
      Location:470 → 1006
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam13907
      Location:1510 → 1571
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:393 → 449
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:282 → 360
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:466 → 703
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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