U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    HDAC9 histone deacetylase 9 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708314, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    HDAC9provided by VGNC
    Official Full Name
    histone deacetylase 9provided by VGNC
    Primary source
    VGNC:VGNC:73165
    See related
    Ensembl:ENSMMUG00000011170
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HDAC9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (96032982..96947236, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (94097067..94848497)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene Fer3 like bHLH transcription factor Neighboring gene twist family bHLH transcription factor 1 Neighboring gene nucleophosmin pseudogene Neighboring gene uncharacterized LOC114676971 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene rRNA methyltransferase 3, mitochondrial pseudogene Neighboring gene phosphoribosyl pyrophosphate synthetase 1 like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone deacetylase 9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      96032982..96947236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845987.1 → XP_028701820.1  histone deacetylase 9 isoform X22

      UniProtKB/TrEMBL
      A0A5F8ALA5
      Related
      ENSMMUP00000067442.1, ENSMMUT00000079859.1
      Conserved Domains (2) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
      cd11681
      Location:656 → 1033
      HDAC_classIIa; Histone deacetylases, class IIa

    2. XM_028845975.1 → XP_028701808.1  histone deacetylase 9 isoform X14

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    3. XM_028845976.1 → XP_028701809.1  histone deacetylase 9 isoform X15

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    4. XM_028845978.1 → XP_028701811.1  histone deacetylase 9 isoform X16

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    5. XM_028845963.1 → XP_028701796.1  histone deacetylase 9 isoform X7

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    6. XM_028845958.1 → XP_028701791.1  histone deacetylase 9 isoform X2

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    7. XM_028845959.1 → XP_028701792.1  histone deacetylase 9 isoform X3

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:60 → 146
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    8. XM_028845962.1 → XP_028701795.1  histone deacetylase 9 isoform X6

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    9. XM_028845957.1 → XP_028701790.1  histone deacetylase 9 isoform X1

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    10. XM_028845974.1 → XP_028701807.1  histone deacetylase 9 isoform X13

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:60 → 149
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    11. XM_028845973.1 → XP_028701806.1  histone deacetylase 9 isoform X12

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    12. XM_028845984.1 → XP_028701817.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    13. XM_028845971.1 → XP_028701804.1  histone deacetylase 9 isoform X11

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    14. XM_028845960.1 → XP_028701793.1  histone deacetylase 9 isoform X4

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    15. XM_028845964.1 → XP_028701797.1  histone deacetylase 9 isoform X8

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    16. XM_028845983.1 → XP_028701816.1  histone deacetylase 9 isoform X19

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    17. XM_028845969.1 → XP_028701802.1  histone deacetylase 9 isoform X10

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    18. XM_028845961.1 → XP_028701794.1  histone deacetylase 9 isoform X5

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    19. XM_015133976.2 → XP_014989462.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    20. XM_028845965.1 → XP_028701798.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    21. XM_028845979.1 → XP_028701812.1  histone deacetylase 9 isoform X17

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    22. XM_028845986.1 → XP_028701819.1  histone deacetylase 9 isoform X21

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    23. XM_028845972.1 → XP_028701805.1  histone deacetylase 9 isoform X11

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    24. XM_028845970.1 → XP_028701803.1  histone deacetylase 9 isoform X10

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    25. XM_028845980.1 → XP_028701813.1  histone deacetylase 9 isoform X17

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    26. XM_015133978.2 → XP_014989464.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    27. XM_028845985.1 → XP_028701818.1  histone deacetylase 9 isoform X20

      UniProtKB/TrEMBL
      F6VAD3
      Conserved Domains (1) summary
      cl25407
      Location:38 → 124
      ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

    28. XM_028845968.1 → XP_028701801.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Related
      ENSMMUP00000014626.4, ENSMMUT00000015617.4
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    29. XM_028845967.1 → XP_028701800.1  histone deacetylase 9 isoform X9

      UniProtKB/TrEMBL
      F6VAD3, H9G2D8
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    30. XM_028845982.1 → XP_028701815.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Related
      ENSMMUP00000068594.1, ENSMMUT00000087752.1
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    31. XM_028845981.1 → XP_028701814.1  histone deacetylase 9 isoform X18

      UniProtKB/TrEMBL
      A0A5F7ZSH2, F6VAD3
      Conserved Domains (1) summary
      cd10163
      Location:38 → 127
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.