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    IFT80 intraflagellar transport 80 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705146, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IFT80provided by VGNC
    Official Full Name
    intraflagellar transport 80provided by VGNC
    Primary source
    VGNC:VGNC:84166
    See related
    Ensembl:ENSMMUG00000017282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IFT80 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (62539252..62673214, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (134313877..134447795)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD36 Neighboring gene chromosome 2 C3orf80 homolog Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene microRNA mir-16-2 Neighboring gene microRNA mir-15b Neighboring gene structural maintenance of chromosomes 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 80 homolog
    Names
    intraflagellar transport 80 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      62539252..62673214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131718.2 → XP_014987204.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      F7GWJ7, G7MJE3, H9FXN9
      Related
      ENSMMUP00000067970.1, ENSMMUT00000086956.1
      Conserved Domains (2) summary
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015131719.2 → XP_014987205.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      F7GWJ7, G7MJE3, H9FXN9
      Conserved Domains (2) summary
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015131724.2 → XP_014987210.1  intraflagellar transport protein 80 homolog isoform X3

      UniProtKB/TrEMBL
      A0A5F8AG74
      Related
      ENSMMUP00000076917.1, ENSMMUT00000082659.1
      Conserved Domains (3) summary
      COG2319
      Location:78 → 500
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:17 → 62
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:13 → 249
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    4. XM_015131722.2 → XP_014987208.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      F7GWJ7, G7MJE3, H9FXN9
      Conserved Domains (2) summary
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    5. XM_015131720.2 → XP_014987206.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      F7GWJ7, G7MJE3, H9FXN9
      Related
      ENSMMUP00000022739.4, ENSMMUT00000024296.4
      Conserved Domains (2) summary
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    6. XM_028843813.1 → XP_028699646.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      F7GWJ7, G7MJE3, H9FXN9
      Conserved Domains (2) summary
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    7. XM_028843814.1 → XP_028699647.1  intraflagellar transport protein 80 homolog isoform X5

      UniProtKB/TrEMBL
      G7MJE3
      Conserved Domains (3) summary
      COG2319
      Location:3 → 423
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:13 → 49
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:12 → 176
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    8. XM_015131723.2 → XP_014987209.1  intraflagellar transport protein 80 homolog isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZH30
      Related
      ENSMMUP00000063930.1, ENSMMUT00000096772.1
      Conserved Domains (3) summary
      COG2319
      Location:91 → 560
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    9. XM_015131725.2 → XP_014987211.1  intraflagellar transport protein 80 homolog isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZH30
      Conserved Domains (3) summary
      COG2319
      Location:91 → 560
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:110 → 145
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:17 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_003727189.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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