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    GAPVD1 GTPase activating protein and VPS9 domains 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712449, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GAPVD1provided by VGNC
    Official Full Name
    GTPase activating protein and VPS9 domains 1provided by VGNC
    Primary source
    VGNC:VGNC:72767
    See related
    Ensembl:ENSMMUG00000003668
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GAPVD1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (15292582..15405490, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (13653648..13765093, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene MAPK associated protein 1 Neighboring gene uncharacterized LOC106993602 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106993603 Neighboring gene Rab9 effector protein with kelch motifs Neighboring gene heat shock protein family A (Hsp70) member 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTPase-activating protein and VPS9 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      15292582..15405490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015116839.2 → XP_014972325.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      F6TBE4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1329 → 1430
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1218 → 1281
      DUF5601; Domain of unknown function (DUF5601)

    2. XM_028834837.1 → XP_028690670.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      F6TBE4, F6TBG0
      Related
      ENSMMUP00000062971.1, ENSMMUT00000094289.1
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1308 → 1409
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1197 → 1260
      DUF5601; Domain of unknown function (DUF5601)

    3. XM_015116836.2 → XP_014972322.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6TBD5, F6TBE4
      Related
      ENSMMUP00000004896.4, ENSMMUT00000005198.4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1356 → 1457
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1245 → 1308
      DUF5601; Domain of unknown function (DUF5601)

    4. XM_015116838.2 → XP_014972324.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AJW6, F6TBE4
      Related
      ENSMMUP00000078214.1, ENSMMUT00000085531.1
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1335 → 1436
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1224 → 1287
      DUF5601; Domain of unknown function (DUF5601)

    5. XM_015116834.2 → XP_014972320.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6TBD5, F6TBE4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1356 → 1457
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1245 → 1308
      DUF5601; Domain of unknown function (DUF5601)

    6. XM_028834836.1 → XP_028690669.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AJW6, F6TBE4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1335 → 1436
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1224 → 1287
      DUF5601; Domain of unknown function (DUF5601)

    7. XM_015116835.2 → XP_014972321.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6TBD5, F6TBE4
      Related
      ENSMMUP00000004895.4, ENSMMUT00000005197.4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1356 → 1457
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1245 → 1308
      DUF5601; Domain of unknown function (DUF5601)

    8. XM_028834835.1 → XP_028690668.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F6TBD5, F6TBE4
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1356 → 1457
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1245 → 1308
      DUF5601; Domain of unknown function (DUF5601)

    9. XM_028834838.1 → XP_028690671.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A5F8A7Z2, H9F0X0
      Related
      ENSMMUP00000073981.1, ENSMMUT00000100639.1
      Conserved Domains (1) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6

    RNA

    1. XR_003723138.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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