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    SSR2 signal sequence receptor subunit 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719383, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SSR2provided by VGNC
    Official Full Name
    signal sequence receptor subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:77889
    Locus tag
    EGK_01404
    See related
    Ensembl:ENSMMUG00000013495
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SSR2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (94954444..94967062)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (130600989..130613591, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Neighboring gene ubiquilin 4 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene uncharacterized LOC106992874 Neighboring gene relaxin family peptide/INSL5 receptor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translocon-associated protein subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257621.1 → NP_001244550.1  translocon-associated protein subunit beta precursor

      See identical proteins and their annotated locations for NP_001244550.1

      Status: PROVISIONAL

      Source sequence(s)
      JU336075
      UniProtKB/TrEMBL
      A0A8J8XRM8, F6ZKS3, G7MDY3, H9FYW9
      Conserved Domains (1) summary
      pfam05753
      Location:4 → 179
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      94954444..94967062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015110193.2 → XP_014965679.1  translocon-associated protein subunit beta isoform X1

      UniProtKB/TrEMBL
      A0A5F8A7M9
      Related
      ENSMMUP00000073949.1, ENSMMUT00000100939.1
      Conserved Domains (1) summary
      pfam05753
      Location:7 → 182
      TRAP_beta; Translocon-associated protein beta (TRAPB)

    2. XM_015110199.2 → XP_014965685.1  translocon-associated protein subunit beta isoform X2

      UniProtKB/TrEMBL
      A0A8J8XRM8, F6ZKS3, G7MDY3, H9FYW9
      Conserved Domains (1) summary
      pfam05753
      Location:4 → 179
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein
    Heading Accession and Version

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