ifitm1 interferon induced transmembrane protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ifitm1provided by ZNC
Official Full Name: interferon induced transmembrane protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-060526-259
See related: Ensembl:ENSDARG00000093303 AllianceGenome:ZFIN:ZDB-GENE-060526-259
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-226m8.7
Summary: Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including kidney; liver; post-vent region; reproductive system; and tail bud. Human ortholog(s) of this gene implicated in COVID-19; adenosquamous gallbladder carcinoma; and gallbladder adenocarcinoma. Orthologous to human IFITM1 (interferon induced transmembrane protein 1); IFITM2 (interferon induced transmembrane protein 2); and IFITM3 (interferon induced transmembrane protein 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (33258289..33259079, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (32658136..32658926, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Expression of zebrafish ifitm1 mRNA during early embryonic development
Title: Cloning and characterization of ifitm1 and ifitm3 expression during early zebrafish development.

Submit: New GeneRIF Correction

General gene information

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Markers

fd11f02.x1 (e-PCR)
- UniSTS:204115

fj30g11.y1 (e-PCR)
- UniSTS:199027

G47641 (e-PCR)
- UniSTS:108415

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: interferon-induced transmembrane protein 1

Names: interferon induced transmembrane protein 1 (9-27)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.