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    H3P6 H3 histone pseudogene 6 [ Homo sapiens (human) ]

    Gene ID: 440926, updated on 10-Dec-2024

    Summary

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    Official Symbol
    H3P6provided by HGNC
    Official Full Name
    H3 histone pseudogene 6provided by HGNC
    Primary source
    HGNC:HGNC:42980
    See related
    AllianceGenome:HGNC:42980
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    p13; H3F3AP4
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    Genomic context

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    See H3P6 in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (174719800..174720858)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (175208498..175209551)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (175584528..175585586)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12127 Neighboring gene RNA, U7 small nuclear 44 pseudogene Neighboring gene WAS/WASL interacting protein family member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16776 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:175469433-175469934 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:175469935-175470434 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16782 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16784 Neighboring gene uncharacterized LOC124907907 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16785 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12128 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12129 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:175578156-175578368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:175594551-175595290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12130 Neighboring gene Sharpr-MPRA regulatory region 14969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:175629201-175629700 Neighboring gene cholinergic receptor nicotinic alpha 1 subunit Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:175646775-175647382 Neighboring gene uncharacterized LOC124907908 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:175652041-175652856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family. Wells D, et al. Nucleic Acids Res, 1987 Apr 10. PMID 3031613, Free PMC Article
    2. The human histone H3 complement anno 2011. Ederveen TH, et al. Biochim Biophys Acta, 2011 Oct. PMID 21782046
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • H3 histone, family 3A pseudogene
    • H3 histone, family 3A, pseudogene 4

    Clone Names

    • FLJ78487, MGC87038, MGC87039, MGC87782

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002315.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC018890

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      174719800..174720858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      175208498..175209551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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