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    C3h9orf50 similar to human chromosome 9 open reading frame 50 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311852, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C3h9orf50provided by RGD
    Official Full Name
    similar to human chromosome 9 open reading frame 50provided by RGD
    Primary source
    RGD:1311084
    See related
    EnsemblRapid:ENSRNOG00000018486 AllianceGenome:RGD:1311084
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311084
    Summary
    Orthologous to human C9orf50 (chromosome 9 open reading frame 50). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 158.0) and Brain (RPKM 9.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C3h9orf50 in Genome Data Viewer
    Location:
    3p12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (34477535..34484791, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (14076679..14087036, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (9629823..9636137, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101517 Neighboring gene uncharacterized LOC102554501 Neighboring gene N-terminal Xaa-Pro-Lys N-methyltransferase 1 Neighboring gene ankyrin repeat and SOCS box-containing 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C9orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100979.1 → NP_001094449.1  uncharacterized protein C9orf50 homolog

      See identical proteins and their annotated locations for NP_001094449.1

      Status: PROVISIONAL

      Source sequence(s)
      BC127535
      UniProtKB/TrEMBL
      A0JPQ0
      Related
      ENSRNOP00000024953.4, ENSRNOT00000024953.6
      Conserved Domains (1) summary
      pfam15737
      Location:230 → 281
      DUF4685; Domain of unknown function (DUF4685)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      34477535..34484791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283955.1 → XP_063140025.1  uncharacterized protein C9orf50 homolog isoform X2

    2. XM_063283954.1 → XP_063140024.1  uncharacterized protein C9orf50 homolog isoform X1

    3. XM_063283957.1 → XP_063140027.1  uncharacterized protein C9orf50 homolog isoform X5

    4. XM_006233914.5 → XP_006233976.1  uncharacterized protein C9orf50 homolog isoform X3

      See identical proteins and their annotated locations for XP_006233976.1

      UniProtKB/TrEMBL
      A0A8I6AGU8, A6JTZ7
      Related
      ENSRNOP00000092590.1, ENSRNOT00000097005.2
      Conserved Domains (1) summary
      pfam15737
      Location:194 → 245
      DUF4685; Domain of unknown function (DUF4685)

    5. XM_063283958.1 → XP_063140028.1  uncharacterized protein C9orf50 homolog isoform X8

    6. XM_063283956.1 → XP_063140026.1  uncharacterized protein C9orf50 homolog isoform X4

    7. XM_039105244.2 → XP_038961172.1  uncharacterized protein C9orf50 homolog isoform X7

    8. XM_039105243.2 → XP_038961171.1  uncharacterized protein C9orf50 homolog isoform X6

    9. XM_063283959.1 → XP_063140029.1  uncharacterized protein C9orf50 homolog isoform X9

    RNA

    1. XR_005501914.2 RNA Sequence

    2. XR_005501916.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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