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    Transcription factor IIIC, subunit 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832516, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transcription factor IIIC, subunit 5
    Primary source
    TAIR:AT5G24450
    Locus tag
    AT5G24450
    See related
    Araport:AT5G24450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31K7.3; T31K7_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    15
    Sequence:
    Chromosome: 5; NC_003076.8 (8348160..8353303)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calcium-dependent protein kinase (CDPK) family protein Neighboring gene CTC-interacting domain 13 Neighboring gene RING-H2 zinc finger protein Neighboring gene two-component response regulator-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343877.1
    NM_122353.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIIC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor IIIC, subunit 5
    NP_197833.2
    • Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8348160..8353303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122353.5 → NP_197833.2  Transcription factor IIIC, subunit 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197833.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UN40, F4KH50
      Conserved Domains (1) summary
      pfam09734
      Location:19 → 323
      Tau95; RNA polymerase III transcription factor (TF)IIIC subunit

    2. NM_001343877.1 → NP_001330523.1  Transcription factor IIIC, subunit 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB21, Q9FGE5
    Nucleotide Protein
    Heading Accession and Version

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