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    ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825846, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ankyrin repeat family protein
    Primary source
    TAIR:AT4G05040
    Locus tag
    AT4G05040
    See related
    Araport:AT4G05040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C17L7.12
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (2578594..2582290)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NAD(P)H dehydrogenase B2 Neighboring gene Copper transport protein family Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036507.3
    NM_001203750.2
    NM_001203751.2
    NM_001340528.1
    NM_116743.3
    NM_202785.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat family protein
    NP_001031584.1
    • ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001190679.1
    • ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1).
    NP_001190680.1
    • ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1).
    NP_567285.1
    • ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974514.1
    • ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2578594..2582290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340527.1 → NP_001328475.1  ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85

    2. NM_001203750.2 → NP_001190679.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190679.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
      Conserved Domains (5) summary
      COG0666
      Location:176 → 394
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:301 → 421
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:119 → 222
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:495 → 571
      PGG; Domain of unknown function
      sd00045
      Location:114 → 146
      ANK; ANK repeat [structural motif]

    3. NM_001036507.3 → NP_001031584.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031584.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
      Conserved Domains (5) summary
      COG0666
      Location:176 → 394
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:301 → 421
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:119 → 222
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:495 → 571
      PGG; Domain of unknown function
      sd00045
      Location:114 → 146
      ANK; ANK repeat [structural motif]

    4. NM_202785.3 → NP_974514.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974514.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
      Conserved Domains (5) summary
      COG0666
      Location:176 → 394
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:301 → 421
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:119 → 222
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:495 → 571
      PGG; Domain of unknown function
      sd00045
      Location:114 → 146
      ANK; ANK repeat [structural motif]

    5. NM_001203751.2 → NP_001190680.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
      Conserved Domains (5) summary
      COG0666
      Location:176 → 394
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:301 → 421
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:119 → 222
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:495 → 571
      PGG; Domain of unknown function
      sd00045
      Location:114 → 146
      ANK; ANK repeat [structural motif]

    6. NM_116743.3 → NP_567285.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
      Conserved Domains (5) summary
      COG0666
      Location:176 → 394
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:301 → 421
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:119 → 222
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:495 → 571
      PGG; Domain of unknown function
      sd00045
      Location:114 → 146
      ANK; ANK repeat [structural motif]

    7. NM_001340528.1 → NP_001328476.1  ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DGW3, Q94A85
    Nucleotide Protein
    Heading Accession and Version

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