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    golim4a golgi integral membrane protein 4a [ Danio rerio (zebrafish) ]

    Gene ID: 100000956, updated on 9-Dec-2024

    Summary

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    Official Symbol
    golim4aprovided by ZNC
    Official Full Name
    golgi integral membrane protein 4aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041026-2
    See related
    Ensembl:ENSDARG00000113393 AllianceGenome:ZFIN:ZDB-GENE-041026-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    golph4; wu:fc54e03
    Summary
    Predicted to be located in Golgi membrane. Orthologous to human GOLIM4 (golgi integral membrane protein 4). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See golim4a in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (5195246..5209247, complement)
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336686.1 (295..1492)
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336951.2 (2787..22694, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (5088699..5107875, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336686.1 (295..1492)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336951.2 (2787..22694, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene serpin peptidase inhibitor, clade I (neuroserpin), member 1 Neighboring gene uncharacterized LOC101885127 Neighboring gene solute carrier family 24 member 5 Neighboring gene myelin expression factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Bioinformatic analysis of TE-spliced new exons within human, mouse and zebrafish genomes. Kim DS, et al. Genomics, 2010 Nov. PMID 20728532
    2. pak2a mutations cause cerebral hemorrhage in redhead zebrafish. Buchner DA, et al. Proc Natl Acad Sci U S A, 2007 Aug 28. PMID 17715297, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC162878

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Golgi integral membrane protein 4a
    Names
    golgi phosphoprotein 4
    golim4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098192.1 → NP_001091662.1  Golgi integral membrane protein 4a

      See identical proteins and their annotated locations for NP_001091662.1

      Status: PROVISIONAL

      Source sequence(s)
      BC139887
      UniProtKB/TrEMBL
      A5D6U4
      Related
      ENSDARP00000155174.1, ENSDART00000183109.1
      Conserved Domains (2) summary
      TIGR00927
      Location:337 → 523
      2A1904; K+-dependent Na+/Ca+ exchanger
      TIGR02168
      Location:35 → 365
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      5195246..5209247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003336686.1 Reference GRCz11 Primary Assembly

      Range
      295..1492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003336951.2 Reference GRCz11 Primary Assembly

      Range
      2787..22694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395001.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      246236..265514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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