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    LINJ_28_1300 copine i-like protein [ Leishmania infantum JPCM5 ]

    Gene ID: 5070345, updated on 30-Oct-2024

    Summary

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    Gene symbol
    LINJ_28_1300
    Gene description
    copine i-like protein
    Locus tag
    LINJ_28_1300
    Gene type
    protein coding
    RNA name
    copine i-like protein
    RefSeq status
    PROVISIONAL
    Organism
    Leishmania infantum JPCM5 (strain: JPCM5)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
    Orthologs
    Leishmania major all
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    Genomic context

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    See LINJ_28_1300 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    1
    Sequence:
    Chromosome: 28; NC_009412.2 (457503..459029)

    Chromosome 28 - NC_009412.2Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene putative glucose-regulated protein 78 Neighboring gene conserved hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009412.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
    2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    copine i-like protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009412.2 Reference assembly

      Range
      457503..459029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001470123.1 → XP_001470160.1  copine i-like protein [Leishmania infantum JPCM5]

      See identical proteins and their annotated locations for XP_001470160.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2K4YYF8, A0A381MPH1, A0A6L0XI35, A4I3J8
      Conserved Domains (3) summary
      cd04047
      Location:131 → 238
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:6 → 118
      C2A_Copine; C2 domain first repeat in Copine
      cl00057
      Location:241 → 493
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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