U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LINJ_05_0460 putative GTPase [ Leishmania infantum JPCM5 ]

    Gene ID: 5066493, updated on 30-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LINJ_05_0460
    Gene description
    putative GTPase
    Locus tag
    LINJ_05_0460
    Gene type
    protein coding
    RNA name
    putative GTPase
    RefSeq status
    PROVISIONAL
    Organism
    Leishmania infantum JPCM5 (strain: JPCM5)
    Lineage
    Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
    Orthologs
    Leishmania major all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINJ_05_0460 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_009390.2 (147988..149871)

    Chromosome 5 - NC_009390.2Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene conserved hypothetical protein Neighboring gene hypothetical protein, unknown function Neighboring gene monocarboxylate transporter-like protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_009390.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative genomic analysis of three Leishmania species that cause diverse human disease. Peacock CS, et al. Nat Genet, 2007 Jul. PMID 17572675, Free PMC Article
    2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    putative GTPase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009390.2 Reference assembly

      Range
      147988..149871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001462972.1 → XP_001463009.1  putative GTPase [Leishmania infantum JPCM5]

      See identical proteins and their annotated locations for XP_001463009.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2K4YL18, A0A381MAW8, A0A6L0WHP8, A4HSG8
      Conserved Domains (3) summary
      cd01858
      Location:209 → 373
      NGP_1; A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases
      pfam01926
      Location:321 → 430
      MMR_HSR1; 50S ribosome-binding GTPase
      pfam08153
      Location:40 → 169
      NGP1NT; NGP1NT (NUC091) domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials