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    Ribosomal L29e protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819853, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L29e protein family
    Primary source
    TAIR:AT3G06680
    Locus tag
    AT3G06680
    See related
    Araport:AT3G06680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8E24.9
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (2114151..2114948, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tRNA-His Neighboring gene binding protein Neighboring gene putative acyl-coenzyme A oxidase Neighboring gene Ribosomal L29e protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125122.1
    NM_001202903.1
    NM_111548.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal L29e protein family
    NP_001118594.1
    • Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001189832.1
    • Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3).
    NP_187324.2
    • Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3); Has 760 Blast hits to 760 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 97; Plants - 113; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2114151..2114948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202903.1 → NP_001189832.1  Ribosomal L29e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189832.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WM0, Q9M7X5
      UniProtKB/TrEMBL
      A0A5S9XA25, A0A654F662
      Conserved Domains (1) summary
      pfam01779
      Location:4 → 42
      Ribosomal_L29e; Ribosomal L29e protein family

    2. NM_111548.3 → NP_187324.2  Ribosomal L29e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187324.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JC32, Q0WTD2
      Conserved Domains (1) summary
      pfam01779
      Location:26 → 64
      Ribosomal_L29e; Ribosomal L29e protein family

    3. NM_001125122.1 → NP_001118594.1  Ribosomal L29e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118594.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WM0, Q9M7X5
      UniProtKB/TrEMBL
      A0A5S9XA25, A0A654F662
      Conserved Domains (1) summary
      pfam01779
      Location:4 → 42
      Ribosomal_L29e; Ribosomal L29e protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WM0.2

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