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    GGPS6 geranylgeranyl pyrophosphate synthase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841377, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GGPS6
    Official Full Name
    geranylgeranyl pyrophosphate synthase 6
    Primary source
    TAIR:AT1G49530
    Locus tag
    AT1G49530
    See related
    Araport:AT1G49530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14J22.23; geranylgeranyl pyrophosphate synthase 6
    Summary
    encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase
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    Genomic context

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    See GGPS6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (18332429..18333689)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene embryo defective 1273 Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene elongator protein 2 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Single Arabidopsis Gene Encodes Two Differentially Targeted Geranylgeranyl Diphosphate Synthase Isoforms. Ruiz-Sola MÁ, et al. Plant Physiol, 2016 Nov. PMID 27707890, Free PMC Article
    2. Geranylgeranyl pyrophosphate synthase encoded by the newly isolated gene GGPS6 from Arabidopsis thaliana is localized in mitochondria. Zhu XF, et al. Plant Mol Biol, 1997 Oct. PMID 9349257
    3. Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis. Okada K, et al. Plant Physiol, 2000 Apr. PMID 10759500, Free PMC Article
    4. Characterization of the GGPP synthase gene family in Arabidopsis thaliana. Beck G, et al. Plant Mol Biol, 2013 Jul. PMID 23729351
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the absence of a strong transcription initiation site in the G11 gene results in the production of transcripts of different lengths.[GGPPS1]
      Title: A Single Arabidopsis Gene Encodes Two Differentially Targeted Geranylgeranyl Diphosphate Synthase Isoforms.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_103841.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables farnesyltranstransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables farnesyltranstransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in geranyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in geranylgeranyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within isoprenoid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl pyrophosphate synthase 6
    NP_175376.1
    • geranylgeranyl pyrophosphate synthase 6 (GGPS6); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G20160.1); Has 16450 Blast hits to 16445 proteins in 2927 species: Archae - 341; Bacteria - 9363; Metazoa - 273; Fungi - 440; Plants - 451; Viruses - 12; Other Eukaryotes - 5570 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18332429..18333689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103841.3 → NP_175376.1  geranylgeranyl pyrophosphate synthase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175376.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22043, Q9XIC0
      UniProtKB/TrEMBL
      A0A654ESR6
      Conserved Domains (1) summary
      cd00685
      Location:67 → 334
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22043.2

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