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    aspartate-glutamate racemase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838111, updated on 18-Sep-2024

    Summary

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    Official Full Name
    aspartate-glutamate racemase family
    Primary source
    TAIR:AT1G15410
    Locus tag
    AT1G15410
    See related
    Araport:AT1G15410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.36; F9L1_36
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5298324..5300927)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene peptide deformylase 1A Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene late embryogenesis abundant-like protein Neighboring gene WD repeat protein Neighboring gene hypothetical protein (DUF1644) Neighboring gene periodic tryptophan protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332164.1
    NM_101410.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables racemase activity, acting on amino acids and derivatives IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    aspartate-glutamate racemase family
    NP_172993.1
    • aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 2436 Blast hits to 2424 proteins in 674 species: Archae - 57; Bacteria - 1708; Metazoa - 0; Fungi - 2; Plants - 35; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5298324..5300927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101410.4 → NP_172993.1  aspartate-glutamate racemase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W192, A0A5S9ULG9, A0A654EKW3, Q0WLN1, Q9XI28
      Conserved Domains (1) summary
      pfam01177
      Location:84 → 321
      Asp_Glu_race; Asp/Glu/Hydantoin racemase

    2. NM_001332164.1 → NP_001320372.1  aspartate-glutamate racemase family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W192, A0A5S9ULG9, A0A654EKW3, Q0WLN1, Q9XI28
      Conserved Domains (1) summary
      pfam01177
      Location:84 → 321
      Asp_Glu_race; Asp/Glu/Hydantoin racemase
    Nucleotide Protein
    Heading Accession and Version

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